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Today's Topics:
1. Research Associate Position in Discrete Mathematics at
Lancaster University (Bernd Schulze)
2. AlCoB 2015: extended submission deadline 9 March (GRLMC)
3. Permutation Patterns 2015: Registration Open (Robert Brignall)
4. UNSW/USydney Postdoctoral Fellow in Optimization for
Radiotherapy (Gary Froyland)
5. Postdoctoral fellowship in Sydney (Joachim Gudmundsson)
6. EUROCOMB 2015 (Jan.Arne.Telle@ii.uib.no)
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Message: 1
Date: Sat, 28 Feb 2015 11:32:03 +0000 (UTC)
From: Bernd Schulze <schulze.bernd@ymail.com>
To: "dmanet@zpr.uni-koeln.de" <dmanet@zpr.uni-koeln.de>
Subject: [DMANET] Research Associate Position in Discrete Mathematics
at Lancaster University
Message-ID:
<1633892961.223837.1425123123848.JavaMail.yahoo@mail.yahoo.com>
Content-Type: text/plain; charset=UTF-8
Dear colleagues,
I would like to draw your attention to a new research associate position at the Department of Mathematics and Statistics of Lancaster University (with a closing date of March 31, 2015). We are seeking candidates with research interests in Geometric Rigidity Theory who have a recent or expected PhD in Discrete Mathematics.
Further information can be found via the following link:
http://hr-jobs.lancs.ac.uk/Vacancy.aspx?ref=A1178
Best regards,
Bernd Schulze
------------------------------
Message: 2
Date: Sat, 28 Feb 2015 17:40:35 +0100
From: "GRLMC" <grlmc@urv.cat>
To: <dmanet@zpr.uni-koeln.de>
Subject: [DMANET] AlCoB 2015: extended submission deadline 9 March
Message-ID: <BD4B2246F3614FE68FA45459B29E87C3@Carlos1>
Content-Type: text/plain; charset="iso-8859-1"
----------------------------------------------------------------------------
***** SUBMISSION DEADLINE EXTENDED: March 9 *****
----------------------------------------------------------------------------
****************************************************************************
******
2nd INTERNATIONAL CONFERENCE ON ALGORITHMS FOR COMPUTATIONAL BIOLOGY
AlCoB 2015
Mexico City, Mexico
August 4-6, 2015
Organized by:
Centre for Complexity Sciences (C3)
School of Sciences
Institute for Research in Applied Mathematics and Systems (IIMAS)
Graduate Program in Computing Science and Engineering
National Autonomous University of Mexico
Research Group on Mathematical Linguistics (GRLMC)
Rovira i Virgili University
http://grammars.grlmc.com/alcob2015/
****************************************************************************
******
AIMS:
AlCoB aims at promoting and displaying excellent research using string and
graph algorithms and combinatorial optimization to deal with problems in
biological sequence analysis, genome rearrangement, evolutionary trees, and
structure prediction.
The conference will address several of the current challenges in
computational biology by investigating algorithms aimed at: 1) assembling
sequence reads into a complete genome, 2) identifying gene structures in the
genome, 3) recognizing regulatory motifs, 4) aligning nucleotides and
comparing genomes, 5) reconstructing regulatory networks of genes, and 6)
inferring the evolutionary phylogeny of species.
Particular focus will be put on methodology and significant room will be
reserved to young scholars at the beginning of their career.
VENUE:
AlCoB 2015 will take place in Mexico City, the oldest capital city in the
Americas and the largest Spanish-speaking city in the world. The venue will
be the main campus of the National Autonomous University of Mexico.
SCOPE:
Topics of either theoretical or applied interest include, but are not
limited to:
Exact sequence analysis
Approximate sequence analysis
Pairwise sequence alignment
Multiple sequence alignment
Sequence assembly
Genome rearrangement
Regulatory motif finding
Phylogeny reconstruction
Phylogeny comparison
Structure prediction
Compressive genomics
Proteomics: molecular pathways, interaction networks ...
Transcriptomics: splicing variants, isoform inference and quantification,
differential analysis ?
Next-generation sequencing: population genomics, metagenomics,
metatranscriptomics ...
Microbiome analysis
Systems biology
STRUCTURE:
AlCoB 2015 will consist of:
invited lectures
peer-reviewed contributions
INVITED SPEAKERS:
Julio Collado-Vides (National Autonomous University of Mexico, Cuernavaca),
>From Curation of Information to Knowledge Encoding
Gaston Gonnet (Swiss Federal Institute of Technology, Zurich),
Human-Dog-Mouse, Probably and Provable Non-trivial Evolution Close to the
Root of the Mammalian Clade
Peter D. Karp (SRI International, Menlo Park), Algorithms for Metabolic
Route Search and Determination of Reaction Atom Mappings
PROGRAMME COMMITTEE:
Stephen Altschul (National Center for Biotechnology Information, Bethesda,
USA)
Yurii Aulchenko (Russian Academy of Sciences, Novosibirsk, Russia)
Pierre Baldi (University of California, Irvine, USA)
Daniel G. Brown (University of Waterloo, Canada)
Yuehui Chen (University of Jinan, China)
Keith A. Crandall (George Washington University, Washington, USA)
Joseph Felsenstein (University of Washington, Seattle, USA)
Michael Galperin (National Center for Biotechnology Information, Bethesda,
USA)
Susumu Goto (Kyoto University, Japan)
Igor Grigoriev (DOE Joint Genome Institute, Walnut Creek, USA)
Martien Groenen (Wageningen University, The Netherlands)
Yike Guo (Imperial College, London, UK)
Javier Herrero (University College London, UK)
Karsten Hokamp (Trinity College Dublin, Ireland)
Hsuan-Cheng Huang (National Yang-Ming University, Taipei, Taiwan)
Ian Korf (University of California, Davis, USA)
Nikos Kyrpides (DOE Joint Genome Institute, Walnut Creek, USA)
Mingyao Li (University of Pennsylvania, Philadelphia, USA)
Yun Li (University of North Carolina, Chapel Hill, USA)
Jun Liu (Harvard University, Cambridge, USA)
Rodrigo L?pez (European Bioinformatics Institute, Hinxton, UK)
Andrei N. Lupas (Max Planck Institute for Developmental Biology, T?bingen,
Germany)
B.S. Manjunath (University of California, Santa Barbara, USA)
Carlos Mart?n-Vide (chair, Rovira i Virgili University, Tarragona, Spain)
Tarjei Mikkelsen (Broad Institute, Cambridge, USA)
Henrik Nielsen (Technical University of Denmark, Lyngby, Denmark)
Zemin Ning (Wellcome Trust Sanger Institute, Hinxton, UK)
Christine Orengo (University College London, UK)
Modesto Orozco (Institute for Research in Biomedicine, Barcelona, Spain)
Christos A. Ouzounis (Centre for Research & Technology Hellas, Thessaloniki,
Greece)
Manuel Peitsch (Philip Morris International R&D, Neuch?tel, Switzerland)
David A. Rosenblueth (National Autonomous University of Mexico, Mexico City,
Mexico)
Julio Rozas (University of Barcelona, Spain)
Alessandro Sette (La Jolla Institute for Allergy and Immunology, USA)
Peter F. Stadler (University of Leipzig, Germany)
Guy Theraulaz (Paul Sabatier University, Toulouse, France)
Alfonso Valencia (Spanish National Cancer Research Centre, Madrid, Spain)
Kai Wang (University of Southern California, Los Angeles, USA)
Lusheng Wang (City University of Hong Kong, Hong Kong)
Zidong Wang (Brunel University, Uxbridge, UK)
Harel Weinstein (Cornell University, New York, USA)
Jennifer Wortman (Broad Institute, Cambridge, USA)
Jun Yu (Chinese Academy of Sciences, Beijing, China)
Mohammed J. Zaki (Rensselaer Polytechnic Institute, Troy, USA)
Louxin Zhang (National University of Singapore, Singapore)
Hongyu Zhao (Yale University, New Haven, USA)
ORGANIZING COMMITTEE:
Adrian Horia Dediu (Tarragona)
Francisco Hern?ndez-Quiroz (Mexico City)
Carlos Mart?n-Vide (Tarragona, co-chair)
David A. Rosenblueth (Mexico City, co-chair)
Florentina Lilica Voicu (Tarragona)
SUBMISSIONS:
Authors are invited to submit non-anonymized papers in English presenting
original and unpublished research. Papers should not exceed 12 single-spaced
pages (including eventual appendices, references, proofs, etc.) and should
be prepared according to the standard format for Springer Verlag's LNCS
series (see http://www.springer.com/computer/lncs?SGWID=0-164-6-793341-0).
Submissions have to be uploaded to:
https://www.easychair.org/conferences/?conf=alcob2015
PUBLICATIONS:
A volume of proceedings published by Springer in the LNCS/LNBI series will
be available by the time of the conference.
A special issue of the Journal of Computational Biology (Thomson Reuters
2013 impact factor: 1.670) will be later published containing peer-reviewed
substantially extended versions of some of the papers contributed to the
conference. Submissions to it will be by invitation.
REGISTRATION:
The registration form can be found at:
http://grammars.grlmc.com/alcob2015/Registration.php
DEADLINES:
Paper submission: March 9, 2015 (23:59 CET) ? EXTENDED ?
Notification of paper acceptance or rejection: April 10, 2015
Final version of the paper for the LNCS/LNBI proceedings: April 19, 2015
Early registration: April 19, 2015
Late registration: July 21, 2015
Submission to the journal special issue: November 6, 2015
QUESTIONS AND FURTHER INFORMATION:
florentinalilica.voicu@urv.cat
POSTAL ADDRESS:
AlCoB 2015
Research Group on Mathematical Linguistics (GRLMC)
Rovira i Virgili University
Av. Catalunya, 35
43002 Tarragona, Spain
Phone: +34 977 559 543
Fax: +34 977 558 386
ACKNOWLEDGEMENTS:
National Autonomous University of Mexico
Rovira i Virgili University
------------------------------
Message: 3
Date: Sat, 28 Feb 2015 22:09:26 +0000
From: Robert Brignall <rbrignall@gmail.com>
To: dmanet <dmanet@zpr.uni-koeln.de>
Subject: [DMANET] Permutation Patterns 2015: Registration Open
Message-ID:
<CALYwQpDuwe5RjYTaE5gVY5=3bB7Ljm4UezZCnvxkN1riYoLOLw@mail.gmail.com>
Content-Type: text/plain; charset=UTF-8
The 13th International Permutation Patterns Conference will take place
in De Morgan House (home of the London Mathematical Society), London,
from 15--19 June 2015.
*** REGISTRATION IS NOW OPEN.***
To register, visit:
https://sites.google.com/site/pp2015london/registration
Invited speakers:
Bruce Sagan (Michigan State University)
Peter Cameron (University of St Andrews/Queen Mary, University of London)
Important dates:
* Registration closes: 1st May
* Deadline for accommodation: 3rd May
* Deadline for abstract submission: 15th May
Local (Open University) organising committee:
Robert Brignall (chair)
David Bevan
Sara Griffin (administrative support)
We hope to see you in London in June!
------------------------------
Message: 4
Date: Sun, 1 Mar 2015 09:03:56 +0000
From: Gary Froyland <g.froyland@unsw.edu.au>
To: "dmanet@zpr.uni-koeln.de" <dmanet@zpr.uni-koeln.de>
Subject: [DMANET] UNSW/USydney Postdoctoral Fellow in Optimization for
Radiotherapy
Message-ID:
<070CDC0C21888440B853A09CFD98E89B87A2A82F@INFPWXM007.ad.unsw.edu.au>
Content-Type: text/plain; charset="Windows-1252"
Postdoctoral Position in Optimisation for Radiotherapy
The Radiation Physics Laboratory at the University of Sydney currently has several positions open in Medical Physics related research. It is expected that at least one position will involve developing novel mathematics and numerical methods to solve large mixed integer programming problems that arise in radiotherapy treatments of lung cancer patients. This is an exciting opportunity to work on problems that are beneficial to human health, with the research highly likely to be translated to the clinic.
The optimisation position will be funded by a Cancer Australia Grant held by Dr Ricky O?Brien (University of Sydney) and Professor Gary Froyland (UNSW Australia). The positions are full-time fixed term for three years, subject to the completion of a satisfactory probation period for new appointees, with the possibility of a further offer of employment. The optimisation position requires no formal background in medical physics, however, an appreciation on the role that mixed integer programming plays in radiotherapy would be an advantage.
You will have a PhD in Mathematics, Computer Science, or Engineering specialising in optimisation / mathematical programming; excellent oral and written communication skills; demonstrated ability to work effectively as part of a team; demonstrated computer programming ability; demonstrated high level analytical and problem solving skills; a proven record of publications; a proven capacity for self-directed research; and the ability to deliver high-quality project outcomes in a timely manner.
To apply, please follow the link below; the closing date for applications is 23 March, 2015.
http://sydney.nga.net.au/cp/index.cfm?event=jobs.checkJobDetailsNewApplication&returnToEvent=jobs.listJobs&jobid=6e5b3cec-732f-3dcd-c073-889ba71a7912&CurATC=EXT&CurBID=949319bc%2D8898%2D4f11%2Dac4b%2D9db401358504&jobsListKey=0a7307af%2D0ff8%2D47fe%2D9bb7%2D9c3a92c97387&JobListID=a218b974%2Daa19%2D4889%2D821f%2D9bc90126ffaa&persistVariables=CurATC,CurBID,jobsListKey,JobListID,JobID&lid=91404630172
------------------------------
Message: 5
Date: Mon, 2 Mar 2015 10:51:52 +1100
From: Joachim Gudmundsson <joachim.gudmundsson@gmail.com>
To: dmanet@zpr.uni-koeln.de
Subject: [DMANET] Postdoctoral fellowship in Sydney
Message-ID:
<CAGcO+aBLDAOiiZGSU5Jye9ME8On+7DpgYgiN+O+7pkq2PpwoNQ@mail.gmail.com>
Content-Type: text/plain; charset=UTF-8
Postdoctoral fellowship in Sydney:
We are advertising a 24-month postdoctoral research fellowship in
theoretical computer science shared between University of Sydney and
University of New South Wales, Australia. The expected start date is
September 2015.
The successful applicant will conduct research on algorithms with
Serge Gaspers, Joachim Gudmundsson and Julian Mestre in the USYD SACT
research group and UNSW Algorithms group. The aim will be to design
algorithms in the areas of approximation algorithms and parameterized
complexity.
We are looking for outstanding PhD graduates with a track record in
the broad field of algorithms, ideally with an emphasis on
combinatorial optimization, parameterized complexity or computational
geometry. Experience in experimental algorithmics is an advantage but
not essential.
Salary Package: AUD 85,161 ? AUD 91,520 pa plus superannuation
Your application must include
- a research statement
- a detailed curriculum vitae
- contact details of three references
For more information on how to apply, please visit:
https://sydneyalgorithms.wordpress.com/postdoctoral-fellowship/
The closing date for applying is 31 March 2015.
------------------------------
Message: 6
Date: Mon, 02 Mar 2015 10:34:23 +0100
From: Jan.Arne.Telle@ii.uib.no
To: DMANET@zpr.uni-koeln.de
Subject: [DMANET] EUROCOMB 2015
Message-ID: <20150302103423.45736hs5w7bv0wbj.nmijt@impmail.uib.no>
Content-Type: text/plain; charset=ISO-8859-1; DelSp="Yes";
format="flowed"
The European Conference on Combinatorics, Graph Theory and
Applications will be held in Bergen, Norway, Aug 31 - Sep 4, 2015.
Please visit the EuroComb 2015 webpage for the Call for Papers:
http://eurocomb2015.b.uib.no/call-for-papers/
The Conference poster can now be downloaded.
Abstract submission deadline is March 15th.
------------------------------
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