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Today's Topics:
1. AlCoB 2014: call for participation (GRLMC)
2. Khronos-Persyval Days on High-Dimensional Learning and
Optimization (Yury Maximov)
3. MADALGO Summer School on Learning at Scale (Lars Arge)
4. 2nd CfP: Reachability Problems (Oxford 2014) Deadline: 4 June
2014 (Potapov, Igor)
5. WINE 2014: The 10th Conference on Web and Internet Economics
(Xujin Chen)
----------------------------------------------------------------------
Message: 1
Date: Tue, 20 May 2014 12:55:10 +0200
From: "GRLMC" <grlmc@urv.cat>
To: <dmanet@zpr.uni-koeln.de>
Subject: [DMANET] AlCoB 2014: call for participation
Message-ID: <76FF66DFAC2D4248B7729B82A2BA7D4E@Carlos1>
Content-Type: text/plain; charset="UTF-8"
*********************************************************************
1st INTERNATIONAL CONFERENCE ON ALGORITHMS FOR COMPUTATIONAL BIOLOGY
AlCoB 2014
Tarragona, Spain
July 1-3, 2014
http://grammars.grlmc.com/alcob2014/
*********************************************************************
PROGRAM
Tuesday, July 1:
9:15 - 10:15 Registration
10:15 - 10:25 Opening
10:25 - 11:15 Michael Galperin: Comparative Genomics Approaches to Identifying Functionally Related Genes ? Invited Lecture
11:15 - 11:45 Coffee Break
11:45 - 13:00 Liana Amaya Moreno, Ozlem Defterli, Armin F?genschuh, Gerhard-Wilhelm Weber: Vester's Sensitivity Model for Genetic Networks with Time-Discrete Dynamics
Sebastian Wandelt, Ulf Leser: RRCA: Ultra-fast Multiple In-Species Genome Alignments
David A. Rosenblueth, Stalin Mu?oz, Miguel Carrillo, Eugenio Azpeitia: Inference of Boolean Networks from Gene Interaction Graphs using a SAT Solver
13:00 - 14:30 Lunch
14:30 - 15:45 Laurent Lemarchand, Reinhardt Euler, Congping Lin, Imogen Sparkes: Modeling the Geometry of the Endoplasmic Reticulum Network
Sean Maxwell, Mark R. Chance, Mehmet Koyut?rk: Efficiently Enumerating All Connected Induced Subgraphs of a Large Molecular Network
Bogdan Iancu, Diana-Elena Gratie, Sepinoud Azimi, Ion Petre: On the Implementation of Quantitative Model Refinement
15:45 - 16:00 Break
16:00 - 16:50 Jason Papin: Network Analysis of Microbial Pathogens ? Invited Lecture
Wednesday, July 2:
9:00 - 9:50 Uwe Ohler: Decoding Non-coding Regulatory Regions in DNA and RNA (I) ? Invited Tutorial
9:50 - 10:00 Break
10:00 - 11:15 Dimitris Polychronopoulos, Anastasia Krithara, Christoforos Nikolaou, Giorgos Paliouras, Yannis Almirantis, George Giannakopoulos: Analysis and Classification of Constrained DNA Elements with N-gram Graphs and Genomic Signatures
Inken Wohlers, Mathilde Le Boudic-Jamin, Hristo Djidjev, Gunnar W. Klau, Rumen Andonov: Exact Protein Structure Classification Using the Maximum Contact Map Overlap Metric
Tomohiko Ohtsuki, Naoki Nariai, Kaname Kojima, Takahiro Mimori, Yukuto Sato, Yosuke Kawai, Yumi Yamaguchi-Kabata, Testuo Shibuya, Masao Nagasaki: SVEM: A Structural Variant Estimation Method using Multi-Mapped Reads on Breakpoints
11:15 - 11:45 Coffee Break
11:45 - 13:00 Claire Lemaitre, Liviu Ciortuz, Pierre Peterlongo: Mapping-free and Assembly-free Discovery of Inversion Breakpoints from Raw NGS Reads
Giuseppe Narzisi, Bud Mishra, Michael C. Schatz: On Algorithmic Complexity of Biomolecular Sequence Assembly Problem
Ivo Hedtke, Ioana Lemnian, Matthias M?ller-Hannemann, Ivo Grosse: On Optimal Read Trimming in Next Generation Sequencing and Its Complexity
13:00 - 14:30 Lunch
14:30 - 15:20 Annie Chateau, Rodolphe Giroudeau: Complexity and Polynomial-Time Approximation Algorithms around the Scaffolding Problem
Ernst Althaus, Andreas Hildebrandt, Anna Katharina Hildebrandt: A Greedy Algorithm for Hierarchical Complete Linkage Clustering
15:30 Visit of the City
Thursday, July 3:
9:00 - 9:50 Uwe Ohler: Decoding Non-coding Regulatory Regions in DNA and RNA (II) ? Invited Tutorial
9:50 - 10:00 Break
10:00 - 11:15 Carla Negri Lintzmayer, Zanoni Dias: On Sorting of Signed Permutations by Prefix and Suffix Reversals and Transpositions
Thiago da Silva Arruda, Ulisses Dias, Zanoni Dias: Heuristics for the Sorting by Length-Weighted Inversions Problem on Signed Permutations
Alexander Grigoriev, Steven Kelk, Nela Leki?: On Low Treewidth Graphs and Supertrees
11:15 - 11:45 Coffee Break
11:45 - 13:00 Carla Negri Lintzmayer, Zanoni Dias: On the Diameter of Rearrangement Problems
Amina Noor, Aitzaz Ahmad, Bilal Wajid, Erchin Serpedin, Mohamed Nounou, Hazem Nounou: A Closed-Form Solution for Transcription Factor Activity Estimation using Network Component Analysis
Kaname Kojima, Naoki Nariai, Takahiro Mimori, Yumi Yamaguchi-Kabata, Yukuto Sato, Yosuke Kawai, Masao Nagasaki: HapMonster: A Statistically Unified Approach for Variant Calling and Haplotyping Based on Phase-Informative Reads
13:00 Closing
------------------------------
Message: 2
Date: Tue, 20 May 2014 16:49:50 +0400
From: Yury Maximov <yurymaximov@gmail.com>
To: dmanet@zpr.uni-koeln.de
Subject: [DMANET] Khronos-Persyval Days on High-Dimensional Learning
and Optimization
Message-ID:
<CAERHktRg3Mfsf3v9KrQwNe4QDdFentpXmYoPvh+EZ3QCuS1uAQ@mail.gmail.com>
Content-Type: text/plain; charset=UTF-8
CALL FOR PARTICIPATION:
-------------------------------------------------------------------------------------
Khronos-Persyval Days on
High-Dimensional Learning and Optimization
June 10 - 12, 2014
Grenoble, France
http://lear.inrialpes.fr/people/harchaoui/projects/khronos/
-------------------------------------------------------------------------------------
ABOUT Khronos-Persyval Days:
----------------------------------------------
Khronos-Persyval Days on High-Dimensional Learning and Optimization is
an international workshop organized as part of the Khronos project of
the Labex Persyval and the Gargantua project of the CNRS-Mastodons
program. The goal of this workshop is to provide an overview of some
of the latest advances in mathematical optimization and statistical
learning. We bring together three leading researchers in the field and
international participants at the graduate level and above. Each
lecture is a tutorial, starting from the basic concepts and tools, and
progressively moving further to the latest advances.
PROGRAM:
-----------------
Our invited speakers are (in alphabetical order):
* Arnak Dalalyan, CREST-ENSAE, Paris
On Prediction Performance of Lasso and Related Methods (2*3hrs)
* Vladimir Koltchinskii, GeorgiaTech, USA.
High-dimensional Dimension Reduction (3hrs)
* Peter Richtarik, University of Edinburgh, UK
Randomized Coordinate Descent for Big Data Optimization (2*3hrs)
LOCATION & TRAVEL INFORMATION:
-------------------------------------------------------
The workshop will be held from June 10th to June 12th, and will take
place in the university campus in Grenoble. Being located on several
main train and road routes, Grenoble is easily reachable from Geneva,
Lyon or Paris. Grenoble also has its own international airport.
Each day will include 2 lectures of 3 hours each, from 9am to 12pm and
from 2pm to 5pm. The workshop schedule may be subject to changes
before June 10th 2014; please check the workshop webpage before then.
REGISTRATION:
-----------------------
There are no registration fees. However, for organization reasons,
registration before May 27th is mandatory, even for permanent
researchers/professors. If you are a permanent researcher/professor,
and you plan to attend not all the talks but only some of them, please
do also register. Registration details are provided on the workshop
page.
CONTACT:
---------------
The homepage of Khronos-Persyval Days on High-Dimensional Learning and
Optimization, providing forms for registration can be found at
http://lear.inrialpes.fr/people/harchaoui/projects/khronos/
If you have further questions, please do not hesitate to contact the
Khronos-Persyval team by sending an email to khronos.persyval at
gmail.com
ORGANIZATION:
------------------------
* Massih-Reza Amini, LIG, UJF, Grenoble
* Zaid Harchaoui , LEAR-INRIA and LJK,Grenoble
* Anatoli Juditsky, UJF and LJK,Grenoble
* Yury Maximov, LIG,Grenoble
------------------------------
Message: 3
Date: Tue, 20 May 2014 15:53:38 +0200
From: Lars Arge <large@cs.au.dk>
To: <DMANET@zpr.uni-koeln.de>
Subject: [DMANET] MADALGO Summer School on Learning at Scale
Message-ID: <537B5E62.3060105@cs.au.dk>
Content-Type: text/plain; charset="ISO-8859-1"; format=flowed
MADALGO Summer School on
LEARNING AT SCALE
August 11- 14, 2014, Aarhus University, Denmark
madalgo.au.dk/learningatscale2014
OVERVIEW AND GOAL
The MADALGO Summer School 2014 will introduce attendees to the latest
developments in learning at scale. The topics will include high
dimensional inference, algorithmic perspectives on learning and
optimization, and challenges in learning with huge data.
LECTURES
The school will be taught by experts in learning:
* Amr Ahmed (Google)
* Mikhail Belkin (Ohio State)
* Stefanie Jegelka (Berkeley)
* Ankur Moitra (MIT)
PARTICIPATION
The summer school will take place on August 11-14, 2014 at Center for
Massive Data Algorithmics (MADALGO) at the Department of Computer
Science, Aarhus University, Denmark. The school is targeted at graduate
students, as well as researchers interested in an in-depth introduction
to Learning. Registration will open soon at the school webpage.
Registration is free on a first-come-first serve basis - handouts,
coffee breaks, lunches and a dinner will be provided by MADALGO and
Aarhus University.
ORGANIZING COMMITTEE
* Suresh Venkatasubramanian (University of Utah)
* Peyman Afshani (MADALGO, Aarhus University)
* Lars Arge (MADALGO, Aarhus University)
* Gerth S. Brodal (MADALGO, Aarhus University)
* Kasper Green Larsen (MADALGO, Aarhus University)
LOCAL ARRANGEMENTS
* Trine Ji Holmgaard (MADALGO, Aarhus University)
* Katrine ?stergaard Rasmussen (MADALGO, Aarhus University)
ABOUT MADALGO
Center for Massive Data Algorithmics is a major basic research center
funded by the Danish National Research Foundation. The center is located
at the Department of Computer Science, Aarhus University, Denmark, but
also includes researchers at CSAIL, Massachusetts Institute of
Technology in the US, and at the Max Planck Institute for Informatics
and at Frankfurt University in Germany. The center covers all areas of
the design, analysis and implementation of algorithms and data
structures for processing massive data (interpreted broadly to cover
computations where data is large compared to the computational
resources), but with a main focus on I/O-efficient, cache-oblivious and
data stream algorithms.
------------------------------
Message: 4
Date: Tue, 20 May 2014 15:17:15 +0000
From: "Potapov, Igor" <potapov@liverpool.ac.uk>
To: "dmanet@zpr.uni-koeln.de" <dmanet@zpr.uni-koeln.de>
Subject: [DMANET] 2nd CfP: Reachability Problems (Oxford 2014)
Deadline: 4 June 2014
Message-ID:
<7ECE8E01AEB79A459E3F30C54E56CF7CBC8AEF47@CHEXMBX1.livad.liv.ac.uk>
Content-Type: text/plain; charset="Windows-1252"
REACHABILITY PROBLEMS 2014
Submission deadline: 4th of June 2014
-------------------------------------------------
The 8th International Workshop on Reachability Problems (RP2014)
(22 - 24 September 2013, University of Oxford, United Kingdom)
http://www.cs.ox.ac.uk/RP2014/
The Department of Computer Science will organize the 8th International Workshop
on Reachability Problems (RP'2014). This event will take place at the
Department in the centre of Oxford, 22 - 24 September 2014.
Papers presenting original contributions related to reachability problems in
different computational models and systems are being sought. This will also be
the occasion to review recent breakthroughs by renown invited experts and
survey emerging trends and emphasize on key open challenges. Participants are
kindly encouraged to discuss on core scientific issues that need to be further
tackled.
The Reachability Workshop is specifically aimed at gathering together
scholars from diverse disciplines and backgrounds interested in
reachability problems that appear in
- Algebraic structures
- Computational models
- Hybrid systems
- Logic and Verification
Invited Speakers:
- Byron Cook, UCL and Microsoft Research, UK.
- Kousha Etessami, University of Edinburgh, UK.
- Anca Muscholl, LaBRI Bordeaux, France.
- Sylvain Schmitz, LSV and ENS-Cachan, France.
Submissions:
Papers presenting original contributions related to reachability problems in
different computational models and systems are being sought.
Topics of interest include (but are not limited to): Reachability for infinite
state systems, rewriting systems; Reachability analysis in counter/ timed/
cellular/ communicating automata; Petri-Nets; computational aspects of
semigroups, groups and rings; Reachability in dynamical and hybrid systems;
frontiers between decidable and undecidable reachability problems; complexity
and decidability aspects; predictability in iterative maps and new
computational paradigms
Authors are invited to submit a draft of a full paper with at most 12 pages (in
LaTeX, formatted according to LNCS guidelines) via the conference web page.
Proofs omitted due to space constraints must be put into an appendix to be read
by the program committee members at their discretion. Submissions deviating
from these guidelines risk rejection. Electronic submissions should be
formatted in pdf. Simultaneous submission to other conferences or workshops
with published proceedings is not allowed.
Important Dates
- Submission deadline: 4 June 2014
- Notification to authors: 4 July 2014
- Final version: 14 July 2014
- Workshop: 22 - 24 September 2014
Presentation-Only Track
In addition to regular papers that will appear in our LNCS proceedings, we
invite researchers to apply to give a presentation at RP 2014 without an
accompanying paper. Such presentations can be based on work that has appeared
(or which is going to appear) in the proceedings of another conference, or
which has not yet been submitted. These contributions will be judged solely on
the basis of their attractiveness to the workshop.
To apply to give such a presentation please submit a PDF file containing a
short abstract (up to two pages) by e-mail [ rp2014@easychair.org ] by August
4th 2014, with subject "RP2014 Presentation-Only Track". This abstract will
not be published in the conference proceedings.
Notification for the presentation-only track will be August 11th 2014.
Proceedings
The Conference Proceedings will be published as the volume of the Springer
Verlag LNCS (Lecture Notes in Computer Science) series and distributed at the
Conference. We plan also to publish selected papers in a special issue of a
high quality journal following the regular referee procedure.
RP2014 Program Committee:
Marius Bozga, VERIMAG Grenoble
Thomas Brihaye, Universit? de Mons
V?ronique Bruy?re, Universit? de Mons
Laurent Doyen, LSV Cachan
John Fearnley, University of Liverpool
Gilles Geeraerts, Universit? Libre de Bruxelles
Madhavan Mukund, Chennai Math. Institute
Andrzej Murawski, University of Warwick
Paritosh Pandya, TATA Institute of Fundamental Research
Igor Potapov, University of Liverpool
Stefan G?ller, University of Bremen
Martin Lange, University of Kassel
Kim Larsen, Aalborg University
Ranko Lazic, University of Warwick
Rupak Majumdar, Max Planck Institute for Software Systems
Nicolas Markey, ENS Cachan
Joel Ouaknine (co-chair), University of Oxford
Alexander Rabinovich, Tel Aviv University
Tayssir Touili, LIAFA University Paris Diderot
Thomas Wahl, Northeastern University
James Worrell (co-chair), University of Oxford
Lijun Zhang, Institute of Software ? Chinese Academy of Science
Previous Workshops:
2013: RP?13 in Uppsala, Sweden
LNCS proceedings, Volume 8169/2013, Springer Verlag
2012: RP?12 in Bordeaux, France
LNCS proceedings, Volume 7550/2012, Springer Verlag
2011: RP'11 in Genova, Italy
LNCS proceedings, Volume 6945/2011, Springer Verlag
2010: RP'10 in Brno, Czech Republic
LNCS proceedings, Volume 6227/2010, Springer Verlag
2009: RP'09 in Palaiseau, France
LNCS proceedings, Volume 5797/2009, Springer Verlag
2008: RP'08 in Liverpool, UK
ENTCS proceedings, Volume 223, Elsevier
2007: RP'07 in Turku, Finland
TUCS General Publication Series, Volume 45, Turku Centre for Computer Science
------------------------------
Message: 5
Date: Wed, 21 May 2014 01:52:33 +0800
From: "Xujin Chen" <xchen@amss.ac.cn>
To: <dmanet@zpr.uni-koeln.de>
Subject: [DMANET] WINE 2014: The 10th Conference on Web and Internet
Economics
Message-ID: <786E941F222A40AAAB1B6AA953C53B4D@XujinChenPC>
Content-Type: text/plain; format=flowed; charset="utf-8";
reply-type=original
Call for Paper
--------------------------------------------------------------------------------------------
WINE 2014: The 10th Conference on Web and Internet Economics
--------------------------------------------------------------------------------------------
Dec. 14 - 17, 2014, Academy of Mathematics and Systems Science, Beijing,
China
http://wine2014.amss.ac.cn
Co-located with the 11th Workshop on Algorithms and Models of the Web Graph
(WAW 2014)
OVERVIEW
The Conference on Web and Internet Economics (WINE, formerly Workshop on
Internet & Network Economics) is an interdisciplinary forum for the exchange
of ideas and results on incentives and computation arising from these
various fields. Invited speakers of previous WINEs include not only many
famous theorists from prestigious universities in the world, such as Kenneth
J. Arrow, the winner of the Nobel Memorial Prize in Economics, but also top
researchers from many big business, such as Microsoft Research, Yahoo!
Research, IBM Research, Google Inc., eBay Research Labs and so on.
Participants of WINEs come from universities and industries as well.
WINE 2014 is jointly organized by Academy of Mathematics and Systems Science
(AMSS), Chinese Academy of Sciences, and Tsinghua University (THU). AMSS is
a national comprehensive academic research center of mathematics and systems
science, and THU is one of most renowned universities in China. WINE 2014
will be held in Beijing, the center of cultural and business activities in
China and an amazing mix of old and new.
IMPORTANT DATES
? Regular paper submission: July 25, 2014
? Poster submission: August 22, 2014
? Regular paper author notification: September 8, 2014
? Poster author notification: September 15, 2014
? Camera-ready version submission: September 29, 2014
INFORMATION & CONTACT
http://wine2014.amss.ac.cn & email: wine2014@amss.ac.cn
------------------------------
Subject: Digest Footer
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End of dmanet Digest, Vol 75, Issue 18
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